rs26890759 SNP Detail

Summary

• ID
  rs26890759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70418200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTATCGGGAA GGCATGACCA AGGACGAATG TCTGCAGTTC
  ACTGCCAATG GTGAGACTCT GTGCTTCCAC GCCTGTGAAC TTCAGCCCTC GTTCCCAAGC
  Y
  GTGCCAAGGG TCCTCACGTT CAGCTACTAA CTCCAAACCC ACTGTCCTCG TTTTATCTAC
  AGCTCTCGCT TTGGCCATGG AACGCGACGG CTCCAGTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37165478	NES08484020	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T		C	T	T	C		T
ss323735975	CHEV_11_70340876	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26890759					SNP	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165478	NES08484020	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70418200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	1832 bp distal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Rr369269	regulatory region 369269	1990 bp downstream
Rr450322	regulatory region 450322	1978 bp distal
Tssr102728	transcription start site region 102728	1980 bp downstream
Tssr102729	transcription start site region 102729	1443 bp downstream
Tssr102730	transcription start site region 102730	1399 bp downstream
Tssr102731	transcription start site region 102731	1340 bp downstream
Tssr102732	transcription start site region 102732	1540 bp upstream