rs26890765 SNP Detail

Summary

• ID
  rs26890765
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70417278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAAGTG GGCTCCTTCT
  CACTGTTTCC GCCATCCTGC AGGTCCTACA TCGCCAATCG AGTGACTGAC AAGCTGACCC
  CTATCCACGA TCACATCTTC TGCTGCCGCT CAGGCTCAGC CGCTGATACC CAAGCAGTGG
  CAGACGCTGT CACTTACCAG CTTGGTTTCC ACAGGTACTT GTGGGCAGGG GAGGAACAAC
  S
  ACCCTGAAGG CTCTGGAACA TAAGGCACTA AAAGGCCTGA CTCCAGATCC TGATATTGCT
  TTGTTTGTGA TCTTCCAACC CCACCTTCTA GTATTGAACT GAACGAGCCT CCACTAGTCC
  ACACAGCCGC CAGTCTCTTT AAGGAGATGT GTTACCGGTA CAGAGAAGAT CTGATGGCAG
  GAATCATCAT TGCAGGCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165484	NES08484042	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890765					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165484	NES08484042	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70417278 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	910 bp distal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Rr369269	regulatory region 369269	1068 bp downstream
Rr450322	regulatory region 450322	1056 bp distal
Tssr102728	transcription start site region 102728	1058 bp downstream
Tssr102729	transcription start site region 102729	521 bp downstream
Tssr102730	transcription start site region 102730	477 bp downstream
Tssr102731	transcription start site region 102731	418 bp downstream