rs26890768 SNP Detail

Summary

• ID
  rs26890768
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70416658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGACGTGT TGAGCCCCCT TAAGATTTGA TAATAGGTTC
  GCGGAGCACG AATTTTGCAT TATAAAATCC GGGTGAAGAA TTATTGAGGT CGGTATATAC
  W
  CGAGAATGCG GTAAGGCTAA AAGAGTTACC TTTTTTACAC TATTCTTCCC AGACCACGAT
  CATGGCTGTG CAGTTTAATG GGGGCGTGGT TCTAGGAGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37165488	NES08484038	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T	A	T	T		A	T	T	A		T
ss38835777	mCV24082441	ABI	CRAMUS_MOUSE	f	SNP							T		A
ss323735956	CHEV_11_70339334	CHEVERUD	SCREENING_POP	f	SNP												T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26890768					SNP	T	T	T	T	T	T	T	T	A	T	T	T	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165488	NES08484038	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70416658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	290 bp distal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Rr369269	regulatory region 369269	448 bp downstream
Rr450322	regulatory region 450322	436 bp distal
Tssr102728	transcription start site region 102728	438 bp downstream
Tssr102729	transcription start site region 102729	77 bp upstream
Tssr102730	transcription start site region 102730	122 bp upstream
Tssr102731	transcription start site region 102731	149 bp upstream