rs26890770 SNP Detail

Summary

• ID
  rs26890770
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70416247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTAATT TGACACACTG
  CCGTAAAGTG CCCACTGACT CTAACGACGA GTTCCTACCT CTGTCTTTTC CCTTCTGCCG
  TCAAGCAGCT TCGCTCCCAG AAGGCCACAG AGGCGGACTA AAGAGAGTGA CGGAGCGCTT
  TACGACGGTT GCTTTGTGGC AGAGTAGCAG AGGAAGATGG CGGCCGCCTT AGCTGTTCGT
  S
  GAGCGGGGTC TGCACCGGCC TTTGGGCCGG AGGCTCTCAC CCCAGACTGG GAAAACCGGG
  AAGTCTCCAC AGGGGTGAGG AAAGAGCCAG AGTTCGGAAG ACATGTACTA GGCCTGACGG
  GAGGAAAAAC ATGAAGCCCG AGTGGGTTTG ACTGAGTGGG TTGGGGGGGG GGGAGCGCTG
  TGTTCTGCGA GAGGGAGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165490	NES08484036	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890770					SNP	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165490	NES08484036	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70416247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	within coordinates
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Rr369269	regulatory region 369269	37 bp downstream
Rr450320	regulatory region 450320	1870 bp distal
Rr450321	regulatory region 450321	1831 bp distal
Rr450322	regulatory region 450322	25 bp distal
Tssr102728	transcription start site region 102728	27 bp downstream
Tssr102729	transcription start site region 102729	488 bp upstream
Tssr102730	transcription start site region 102730	533 bp upstream
Tssr102731	transcription start site region 102731	560 bp upstream