rs26890771 SNP Detail

Summary

• ID
  rs26890771
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70416222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCCGCCT CTTTTTTTTT
  TTTTTTTTGG TAATTTGACA CACTGCCGTA AAGTGCCCAC TGACTCTAAC GACGAGTTCC
  TACCTCTGTC TTTTCCCTTC TGCCGTCAAG CAGCTTCGCT CCCAGAAGGC CACAGAGGCG
  GACTAAAGAG AGTGACGGAG CGCTTTACGA CGGTTGCTTT GTGGCAGAGT AGCAGAGGAA
  K
  ATGGCGGCCG CCTTAGCTGT TCGTCGAGCG GGGTCTGCAC CGGCCTTTGG GCCGGAGGCT
  CTCACCCCAG ACTGGGAAAA CCGGGAAGTC TCCACAGGGG TGAGGAAAGA GCCAGAGTTC
  GGAAGACATG TACTAGGCCT GACGGGAGGA AAAACATGAA GCCCGAGTGG GTTTGACTGA
  GTGGGTTGGG GGGGGGGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165491	NES08484035	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890771					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165491	NES08484035	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70416222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	within coordinates
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Rr369269	regulatory region 369269	12 bp downstream
Rr450320	regulatory region 450320	1845 bp distal
Rr450321	regulatory region 450321	1806 bp distal
Rr450322	regulatory region 450322	within coordinates
Tssr102728	transcription start site region 102728	2 bp downstream
Tssr102729	transcription start site region 102729	513 bp upstream
Tssr102730	transcription start site region 102730	558 bp upstream
Tssr102731	transcription start site region 102731	585 bp upstream