rs26890772 SNP Detail

Summary

• ID
  rs26890772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70415970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAAACGAC CCCCCCCACA CACACACACA CACACCTAAA
  ACCTTATAAT GTAAATTAGG CTTCATTTCC AAGTATCCTT TGCCTCCGGG AGCCACAAGC
  Y
  TCTGGTGAGG CAAATCTTTG AGAAGAGGCT CCGCCCTTTT CCCCCCTTCC TAGACCCGCC
  TCTTTTTTTT TTTTTTTTTG GTAATTTGAC ACACTGCCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37165492	NES08484034	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C		C	C	T		C
ss132372300	ENSMUSSNP3321243	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
ss323735952	CHEV_11_70338646	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26890772					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165492	NES08484034	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70415970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	109 bp proximal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	223 bp upstream
Rr369269	regulatory region 369269	within coordinates
Rr450320	regulatory region 450320	1593 bp distal
Rr450321	regulatory region 450321	1554 bp distal
Rr450322	regulatory region 450322	within coordinates
Tssr102728	transcription start site region 102728	217 bp upstream
Tssr102729	transcription start site region 102729	765 bp upstream
Tssr102730	transcription start site region 102730	810 bp upstream
Tssr102731	transcription start site region 102731	837 bp upstream