rs26890775 SNP Detail

Summary

• ID
  rs26890775
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70414929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCACATGCA CTAGAATGGC ACGATTTTTT TTTATTCTAC
  AAACCATATT TAATTATAAA ATCAAGAATT TTAGTATACA AGAATTGAGT TGGCCCAAGT
  W
  TTTATATAAA GAACCAACCT ACATAATTCA TTAGACAAGA AATGATTTCT TCATTGTAAT
  GACTCTTTTT TTTTCCATAT TTTTTTATTG GGTATTTAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37165495	NES08484052	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	A	A	T		A		A	A		A
ss132372252	ENSMUSSNP3062191	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						T
ss323735950	CHEV_11_70337605	CHEVERUD	SCREENING_POP	f	SNP											A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs26890775					SNP	A	A	A	A	A	A	A	T	T	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165495	NES08484052	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70414929 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	1150 bp proximal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	1264 bp upstream
Rr369269	regulatory region 369269	961 bp upstream
Rr450320	regulatory region 450320	552 bp distal
Rr450321	regulatory region 450321	513 bp distal
Rr450322	regulatory region 450322	793 bp proximal
Tssr102728	transcription start site region 102728	1258 bp upstream
Tssr102729	transcription start site region 102729	1806 bp upstream
Tssr102730	transcription start site region 102730	1851 bp upstream
Tssr102731	transcription start site region 102731	1878 bp upstream