rs26890779 SNP Detail

Summary

• ID
  rs26890779
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70413512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAAAAAC CAAACAAACA AAAAACAAAA ACAAACAAGC
  AAACAAAAAA ACAAACAAAC AAACAAAAAC AAGTCAAAAG AAGCCTGGGA CATCCGTGAA
  M
  AACAGAGTGA AGCCTGGGAC ATCCGTGAAC GACAGAGTGA AGCCTGGGAC ATTGTGAACG
  ACAGAGTGAA GCCTGGGACA TCGTGAACGA CAGAGTGCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37165499	NES08484060	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A	C	C		A	C	C	A		C
ss323735946	CHEV_11_70336188	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26890779					SNP	C	C	C	C	C	C	C	A	C	C	C	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165499	NES08484060	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70413512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3187	CpG island 3187	1991 bp distal
Gltpd2	glycolipid transfer protein domain containing 2	1950 bp downstream
Rr450320	regulatory region 450320	683 bp proximal
Rr450321	regulatory region 450321	883 bp proximal