rs26890781 SNP Detail

Summary

• ID
  rs26890781
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70411708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGAGGGTG TGGGAAGACC TGTTATCCCT GCTCTTTGCA
  TCTGAAGGAC TCATATTCCC CTGAGCTCAT TTCAGCTGCT CCATGGCTTC AGTTGCCAGC
  K
  CTTACCAAGT CTCAGTCCAG ATCTGCCCTC CACACAGCCA ACGCAGCATG TCCCGCCTGA
  GTGCTACTTC CCTCCACCAA AAGTACATTT ATTTCTGTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37165501	NES08484076	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G	G		T		G	G	T		G
ss132372216	ENSMUSSNP2526064	ENSEMBL	ENSEMBL_Sanger	f	SNP		G											T
ss323735938	CHEV_11_70334384	CHEVERUD	SCREENING_POP	f	SNP											G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26890781					SNP	G	G	G	G	G	G	G	T	G	G	G	T	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165501	NES08484076	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70411708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3187	CpG island 3187	187 bp distal
Gltpd2	glycolipid transfer protein domain containing 2	146 bp downstream
Rr450318	regulatory region 450318	1676 bp distal
Rr450319	regulatory region 450319	642 bp distal
Tssr102724	transcription start site region 102724	1721 bp downstream
Tssr102725	transcription start site region 102725	1707 bp downstream
Tssr102726	transcription start site region 102726	1679 bp downstream
Tssr102727	transcription start site region 102727	1242 bp downstream