rs26890782 SNP Detail

Summary

• ID
  rs26890782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70411635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG GTGTGGGAAG ACCTGTTATC
  Y
  CTGCTCTTTG CATCTGAAGG ACTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165502	NES08484075	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	T	T		C	C	C	C	C		T	C	C	C
ss38804900	mCV24082088	ABI	CRAMUS_MOUSE	f	SNP	T	C					C
ss132372212	ENSMUSSNP1154430	ENSEMBL	ENSEMBL_Sanger	f	SNP		C											C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890782					SNP	T	C	C	T	T	T	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165502	NES08484075	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70411635 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3187	CpG island 3187	114 bp distal
Gltpd2	glycolipid transfer protein domain containing 2	73 bp downstream
Rr450318	regulatory region 450318	1603 bp distal
Rr450319	regulatory region 450319	569 bp distal
Tssr102724	transcription start site region 102724	1648 bp downstream
Tssr102725	transcription start site region 102725	1634 bp downstream
Tssr102726	transcription start site region 102726	1606 bp downstream
Tssr102727	transcription start site region 102727	1169 bp downstream