rs26890784 SNP Detail

Summary

• ID
  rs26890784
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:70411004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCCCTTG GCACTGTCTT
  CGCCTTTGCC ACCAGCGAGG CCTTCAACAA GGTGACCGAC CTCGAGGCTC GTGTGCACGG
  CCCCAATGCT TCACACTACA CATCGCTGAT GACTATGATC ACATGGGAGC GGGGAGCAGG
  ATTGCTACAG CGCCCGGGAA CCGAACCTGG GCATTCAGCC GGGTCCTCGG GCTCTCGAAC
  K
  CTACTTTTGT TGCATCGCGC GCTGCGCTGG TCCCAGCTCT GCCTCCACAG GGTGGCGACA
  GGGACGCTTG GAGGTCCAGA TGCGGGCACG CAGTGCGGGG AAGCCTACAG CACCGCCCTG
  GCCCCGCACC ATCCATGGCT TATCCGTCAG GCCGCTCGCC TGGCGATCTT GGCCCTCCCG
  AGTCGCGGTC GCCTGCTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165504	NES08484073	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890784					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165504	NES08484073	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70411004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3187	CpG island 3187	within coordinates
Gltpd2	glycolipid transfer protein domain containing 2	Coding-Synonymous
Rr450318	regulatory region 450318	972 bp distal
Rr450319	regulatory region 450319	41 bp proximal
Tssr102724	transcription start site region 102724	1017 bp downstream
Tssr102725	transcription start site region 102725	1003 bp downstream
Tssr102726	transcription start site region 102726	975 bp downstream
Tssr102727	transcription start site region 102727	538 bp downstream