rs26890786 SNP Detail

Summary

• ID
  rs26890786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70408620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTACCAC TGAACTATAT
  CCCTAACCCA TTTTATACTT TAAAAAAAAT TTTTTAAACG ATTTTTAATG TTGTTCACAG
  AACAAGGCTT GATTTGATTT TTATTATTTT AAAAAGCTTA ATGTTTACTT CGTTTTCTGA
  CTCTGTATTT GTGCTGTCAA CACTTACACA CTGGTTTTCT GCTCCTCAAT AAGGAAAGAA
  Y
  GCCAGATCCT GTCATGGGCA TATTTAGCAC AGGTGGGGTC ACCCATTGTT GTTGTTGTTT
  TAGGCAGGTT CCCTAGGACT TTAGTTCTCA GAGCACAAAC TCCTCAAAGT CTGCCTGGGC
  ACGCACCATG TGTGGATTTG GGTGCTTTTC TAAGTTTCTT GGAATAAAGA TTAACAGGGG
  TTCTGGATAG CCATTTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165507	NES08484105	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890786					SNP	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165507	NES08484105	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70408620 () rs orientation: forward

Symbol	Name	Function Class
Gltpd2	glycolipid transfer protein domain containing 2	1415 bp upstream
Gm12317	predicted gene 12317	within coordinates
Rr450316	regulatory region 450316	1552 bp distal
Rr450317	regulatory region 450317	950 bp distal
Rr450318	regulatory region 450318	1248 bp proximal
Tssr102724	transcription start site region 102724	1362 bp upstream
Tssr102725	transcription start site region 102725	1374 bp upstream
Tssr102726	transcription start site region 102726	1389 bp upstream
Tssr102727	transcription start site region 102727	1825 bp upstream