rs26890791 SNP Detail

Summary

• ID
  rs26890791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70401163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGCCTTTGG GGTGCTTGGC GCCATCTACT GCCTGTCAGT
  GGCGGGAGCT GGGCTCCGAA TTGGACCCAA ATGCTTAATA GACAACAAGT GGGACTACCA
  Y
  TTCCAAGAAA CAGAGTAAGT CCTACTTTGC ATTTGTATCC CCCGTTCTGT GCCTCTCCTC
  ACCTGCTCTC TTACTACCTG GTCCAGAAAC AGTGGACCAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165512	NES08484206	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890791					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165512	NES08484206	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70401163 () rs orientation: forward

Symbol	Name	Function Class
Gm73079	predicted gene, 73079	67 bp upstream
Rr235912	regulatory region 235912	within coordinates
Rr247104	regulatory region 247104	within coordinates
Rr251336	regulatory region 251336	1753 bp proximal
Tm4sf5	transmembrane 4 superfamily member 5	within coordinates
Tssr102717	transcription start site region 102717	544 bp downstream
Tssr102718	transcription start site region 102718	347 bp downstream
Tssr102719	transcription start site region 102719	138 bp downstream
Tssr102720	transcription start site region 102720	82 bp downstream
Tssr102721	transcription start site region 102721	500 bp upstream
Tssr102722	transcription start site region 102722	725 bp upstream
Tssr102723	transcription start site region 102723	753 bp upstream
Tssr108976	transcription start site region 108976	831 bp downstream