rs26890793 SNP Detail

Summary

• ID
  rs26890793
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70400595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCCAACC CTCCAGGAAA
  CTATAATCTG GATCGAGATA AGGCAGGCAT AGAAATAAAT ATACTTTAAG GTCGAGTCCA
  ACAGTGATTC GGGAAAGTAT AGATAAGATT GTACAGTCCA AAGGGCTGAG GGCATCATGG
  GCAGCTTCCC TAGATGGACA ATGAAGCAAG TCCGGCCTTG AGGACCTAGG AGAACTGCTA
  W
  CATCAACTCT CTCTCATCCC ACAGGTGCTG TGTCCAGGAA TTGCAGCGGT CCGGGCAGGG
  GGAAAGGGCT GCTGCGGTGC AGGTTGCTGT GGCAACCGCT GCAGGGTAAG AATCAAAATC
  ACAAGTTTAG GCCTTGGTTT CTGATCCCTT CCCCCACAGA ACCGGAAGCA CTGTCTAAAG
  GCAGCCTCTA GGAGGTCTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165514	NES08484204	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890793					SNP	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165514	NES08484204	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70400595 () rs orientation: forward

Symbol	Name	Function Class
Gm73079	predicted gene, 73079	within coordinates
Rr235912	regulatory region 235912	6 bp proximal
Rr247104	regulatory region 247104	5 bp proximal
Tm4sf5	transmembrane 4 superfamily member 5	within coordinates
Tssr102717	transcription start site region 102717	within coordinates
Tssr102718	transcription start site region 102718	192 bp upstream
Tssr102719	transcription start site region 102719	411 bp upstream
Tssr102720	transcription start site region 102720	476 bp upstream
Tssr102721	transcription start site region 102721	1068 bp upstream
Tssr102722	transcription start site region 102722	1293 bp upstream
Tssr102723	transcription start site region 102723	1321 bp upstream
Tssr108976	transcription start site region 108976	1399 bp downstream