rs26890794 SNP Detail

Summary

• ID
  rs26890794
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70400522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCAGAAT ACATATTGCC
  CCCTGTCACC CAAACGTTTG ATGGCCTTCT GTCTAAGATA GCTGTAGTAT ATTAAACCCA
  ACCCTCCAGG AAACTATAAT CTGGATCGAG ATAAGGCAGG CATAGAAATA AATATACTTT
  AAGGTCGAGT CCAACAGTGA TTCGGGAAAG TATAGATAAG ATTGTACAGT CCAAAGGGCT
  S
  AGGGCATCAT GGGCAGCTTC CCTAGATGGA CAATGAAGCA AGTCCGGCCT TGAGGACCTA
  GGAGAACTGC TAACATCAAC TCTCTCTCAT CCCACAGGTG CTGTGTCCAG GAATTGCAGC
  GGTCCGGGCA GGGGGAAAGG GCTGCTGCGG TGCAGGTTGC TGTGGCAACC GCTGCAGGGT
  AAGAATCAAA ATCACAAGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165515	NES08484203	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890794					SNP	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165515	NES08484203	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70400522 () rs orientation: forward

Symbol	Name	Function Class
Gm73079	predicted gene, 73079	within coordinates
Rr235912	regulatory region 235912	79 bp proximal
Rr247104	regulatory region 247104	78 bp proximal
Tm4sf5	transmembrane 4 superfamily member 5	within coordinates
Tssr102717	transcription start site region 102717	within coordinates
Tssr102718	transcription start site region 102718	265 bp upstream
Tssr102719	transcription start site region 102719	484 bp upstream
Tssr102720	transcription start site region 102720	549 bp upstream
Tssr102721	transcription start site region 102721	1141 bp upstream
Tssr102722	transcription start site region 102722	1366 bp upstream
Tssr102723	transcription start site region 102723	1394 bp upstream
Tssr108976	transcription start site region 108976	1472 bp downstream