rs26890795 SNP Detail

Summary

• ID
  rs26890795
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70400505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGCTGC AAGCATTTGT
  GCAGAATACA TATTGCCCCC TGTCACCCAA ACGTTTGATG GCCTTCTGTC TAAGATAGCT
  GTAGTATATT AAACCCAACC CTCCAGGAAA CTATAATCTG GATCGAGATA AGGCAGGCAT
  AGAAATAAAT ATACTTTAAG GTCGAGTCCA ACAGTGATTC GGGAAAGTAT AGATAAGATT
  K
  TACAGTCCAA AGGGCTGAGG GCATCATGGG CAGCTTCCCT AGATGGACAA TGAAGCAAGT
  CCGGCCTTGA GGACCTAGGA GAACTGCTAA CATCAACTCT CTCTCATCCC ACAGGTGCTG
  TGTCCAGGAA TTGCAGCGGT CCGGGCAGGG GGAAAGGGCT GCTGCGGTGC AGGTTGCTGT
  GGCAACCGCT GCAGGGTAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165516	NES08484202	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890795					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165516	NES08484202	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70400505 () rs orientation: forward

Symbol	Name	Function Class
Gm73079	predicted gene, 73079	within coordinates
Rr235912	regulatory region 235912	96 bp proximal
Rr247104	regulatory region 247104	95 bp proximal
Tm4sf5	transmembrane 4 superfamily member 5	within coordinates
Tssr102717	transcription start site region 102717	12 bp upstream
Tssr102718	transcription start site region 102718	282 bp upstream
Tssr102719	transcription start site region 102719	501 bp upstream
Tssr102720	transcription start site region 102720	566 bp upstream
Tssr102721	transcription start site region 102721	1158 bp upstream
Tssr102722	transcription start site region 102722	1383 bp upstream
Tssr102723	transcription start site region 102723	1411 bp upstream
Tssr108976	transcription start site region 108976	1489 bp downstream