rs26890796 SNP Detail

Summary

• ID
  rs26890796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70400306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAAGGTG TGTGTCAGCA
  TGGGACACTC TCTCTGACCC AGCCATGACA AAACCGTCTG CTGTCTCATT AAACGCTGAG
  AGTGGTCTTC TGAGATAGGT CTTGCAGATC CACTTTACCA GTGGCAAAGC TGGCACCCTG
  AGAAAGTAGT CAATTCATAG AGAGGATGAA GGTCCTGACT CCCTTTCAGG TAGGAACCTA
  Y
  CATGCTGCAA GCATTTGTGC AGAATACATA TTGCCCCCTG TCACCCAAAC GTTTGATGGC
  CTTCTGTCTA AGATAGCTGT AGTATATTAA ACCCAACCCT CCAGGAAACT ATAATCTGGA
  TCGAGATAAG GCAGGCATAG AAATAAATAT ACTTTAAGGT CGAGTCCAAC AGTGATTCGG
  GAAAGTATAG ATAAGATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165517	NES08484201	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890796					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165517	NES08484201	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70400306 () rs orientation: forward

Symbol	Name	Function Class
Gm73079	predicted gene, 73079	within coordinates
Rr235912	regulatory region 235912	295 bp proximal
Rr247104	regulatory region 247104	294 bp proximal
Tm4sf5	transmembrane 4 superfamily member 5	within coordinates
Tssr102717	transcription start site region 102717	211 bp upstream
Tssr102718	transcription start site region 102718	481 bp upstream
Tssr102719	transcription start site region 102719	700 bp upstream
Tssr102720	transcription start site region 102720	765 bp upstream
Tssr102721	transcription start site region 102721	1357 bp upstream
Tssr102722	transcription start site region 102722	1582 bp upstream
Tssr102723	transcription start site region 102723	1610 bp upstream
Tssr108976	transcription start site region 108976	1688 bp downstream