rs26890797 SNP Detail

Summary

• ID
  rs26890797
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70400171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCACAAAG GAGAAAAGGA
  CCCAAAGACT GACTCTTAGG AAACCCTGAG ATCCAAGAGT CTCTGTGCAG ATCCTTACAC
  AGTCGACCAC CAAGCCTGTT CATCGCGCCT TCTAACAGCA CAATCCTATG GTACTGTTGA
  AGGTGTGTGT CAGCATGGGA CACTCTCTCT GACCCAGCCA TGACAAAACC GTCTGCTGTC
  W
  CATTAAACGC TGAGAGTGGT CTTCTGAGAT AGGTCTTGCA GATCCACTTT ACCAGTGGCA
  AAGCTGGCAC CCTGAGAAAG TAGTCAATTC ATAGAGAGGA TGAAGGTCCT GACTCCCTTT
  CAGGTAGGAA CCTACCATGC TGCAAGCATT TGTGCAGAAT ACATATTGCC CCCTGTCACC
  CAAACGTTTG ATGGCCTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165518	NES08484200	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890797					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165518	NES08484200	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70400171 () rs orientation: forward

Symbol	Name	Function Class
Gm73079	predicted gene, 73079	within coordinates
Rr235912	regulatory region 235912	430 bp proximal
Rr247104	regulatory region 247104	429 bp proximal
Rr251335	regulatory region 251335	1971 bp distal
Tm4sf5	transmembrane 4 superfamily member 5	within coordinates
Tssr102717	transcription start site region 102717	346 bp upstream
Tssr102718	transcription start site region 102718	616 bp upstream
Tssr102719	transcription start site region 102719	835 bp upstream
Tssr102720	transcription start site region 102720	900 bp upstream
Tssr102721	transcription start site region 102721	1492 bp upstream
Tssr102722	transcription start site region 102722	1717 bp upstream
Tssr102723	transcription start site region 102723	1745 bp upstream
Tssr108976	transcription start site region 108976	1823 bp downstream