rs26890798 SNP Detail

Summary

• ID
  rs26890798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70400069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGCACCT CCTTCAGGCA
  GTTTAATATG GCTGTCTGGG TGCCTGGACG TGACTATTAG CAGGTGAGTG GTTACCTGGG
  TGGGTGTGAG CTTCATAATA AAGGTCACAA AGGAGAAAAG GACCCAAAGA CTGACTCTTA
  GGAAACCCTG AGATCCAAGA GTCTCTGTGC AGATCCTTAC ACAGTCGACC ACCAAGCCTG
  Y
  TCATCGCGCC TTCTAACAGC ACAATCCTAT GGTACTGTTG AAGGTGTGTG TCAGCATGGG
  ACACTCTCTC TGACCCAGCC ATGACAAAAC CGTCTGCTGT CTCATTAAAC GCTGAGAGTG
  GTCTTCTGAG ATAGGTCTTG CAGATCCACT TTACCAGTGG CAAAGCTGGC ACCCTGAGAA
  AGTAGTCAAT TCATAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165519	NES08484199	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890798					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165519	NES08484199	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70400069 () rs orientation: forward

Symbol	Name	Function Class
Gm73079	predicted gene, 73079	within coordinates
Rr235912	regulatory region 235912	532 bp proximal
Rr247104	regulatory region 247104	531 bp proximal
Rr251335	regulatory region 251335	1869 bp distal
Tm4sf5	transmembrane 4 superfamily member 5	within coordinates
Tssr102717	transcription start site region 102717	448 bp upstream
Tssr102718	transcription start site region 102718	718 bp upstream
Tssr102719	transcription start site region 102719	937 bp upstream
Tssr102720	transcription start site region 102720	1002 bp upstream
Tssr102721	transcription start site region 102721	1594 bp upstream
Tssr102722	transcription start site region 102722	1819 bp upstream
Tssr102723	transcription start site region 102723	1847 bp upstream
Tssr108976	transcription start site region 108976	1925 bp downstream