rs26891719 SNP Detail

Summary

• ID
  rs26891719
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:71046773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTGAGG CTGGCCACTC
  TGAGCTTTAG AGAATGCTGA AAAGCTCTGA ATAGACTTAC TGCTCCACTG GGTGATTTCT
  GAGATGCTCA CCTACCATCA GGATCTGCCT GAGAAAGAAA AGGGGGAACA TCTGGATCCC
  TAAGAGGTGT CCTGGAAACA TTGCCATCAG CAAGAAAACT CATTTGGTCA CTGGTTATAT
  M
  TGGAGAATCT AAGGACCAAA GGAAGTTCAG GCAGAGTTCG GACTCACCAA TGTCAGGATC
  CCAAAGAGAC CCCACCTGAC TTTTCTAAGA GGTCCATGAC CAGGTGAGGA TGGGTCTCCT
  TCAGAGCTTG GTAGAATAGG TCTTTGCAGG CTCGACTCCA GGACCGGCTG AGGTTGAAGA
  GCTTCCTCAT CTTATCTTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37164538	NES08480837	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	A	C	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26891719					SNP	A	C	C	A	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37164538	NES08480837	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71046773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nlrp1b	NLR family, pyrin domain containing 1B			Intron
				Noncoding-Transcript-Variant