rs26891862 SNP Detail

Summary

• ID
  rs26891862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70912148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAGGCTC CTAGCAGTTA
  AAGTGAAAAT GAAGACCTGT TTTGAGACCC TAGTTTGAAA TATAAAGGAT GTTTTTCTTG
  CATAGTTCTA CATATGCAAA ACCAGTTTTC TAACCCATCA GTTAGGAGCA AAAAAAATAT
  CCTTATAAAC TCAAACTTGT AACGTTGATT ATACAAGAAC AGATGATGCT AAGGTTGCGT
  Y
  CTTTGGTGGG ATAACTAAAT AACCACATCG CCCTACTTAG ATGACTTTGT CATTGTGTTA
  GAGTAGTGAG GAATGAATTA GTCTCATAAC CAAGGTGAGT GAAGACATGG ACACAGAATA
  CACGTTCCAC TTAAATTTTG TAGTCTTGAG TAGCTGTTCT CTTATAACAC AGTGTCTAAA
  AGGTGGTTCT TGTGTGTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37164753	NES08482069	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26891862					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37164753	NES08482069	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70912148 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	1216 bp distal
Derl2	Der1-like domain family, member 2	1481 bp upstream
Mis12	MIS12 kinetochore complex component	within coordinates
Rr369277	regulatory region 369277	1356 bp downstream
Rr402697	regulatory region 402697	1816 bp downstream
Rr450471	regulatory region 450471	1701 bp distal
Rr450472	regulatory region 450472	1492 bp distal
Rr450473	regulatory region 450473	1051 bp distal
Tssr102806	transcription start site region 102806	1743 bp downstream
Tssr102807	transcription start site region 102807	1705 bp downstream
Tssr102808	transcription start site region 102808	1684 bp downstream
Tssr102809	transcription start site region 102809	1669 bp downstream
Tssr102810	transcription start site region 102810	1434 bp downstream
Tssr102811	transcription start site region 102811	1384 bp downstream