rs26891863 SNP Detail

Summary

• ID
  rs26891863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70911303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTCTAGGC CAGTGTGGAC AACGTAGAAT GGGAGCAAAC
  ACTGGGGAGT GGTCTTAGCA ACTTGTTGGT AAAACTGCAT CTTTATAGCT ACTGCCTCAT
  Y
  ATAGCATTGG CAGTGTCCAA CAGAGAAAAG GCAACATTGG AACTTTTCTC AAAACTGGAA
  GTTTGGATGT AGGTATTTGG TTATGTAATC ATGGCGCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37164754	NES08482068	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	C	T	T		C	T	T	C
ss38683040	mCV24105064	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss132379948	ENSMUSSNP5079643	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss323738912	CHEV_11_70833979	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26891863					SNP	T	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37164754	NES08482068	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70911303 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	371 bp distal
Derl2	Der1-like domain family, member 2	636 bp upstream
Mis12	MIS12 kinetochore complex component	within coordinates
Rr369277	regulatory region 369277	511 bp downstream
Rr402697	regulatory region 402697	971 bp downstream
Rr450471	regulatory region 450471	856 bp distal
Rr450472	regulatory region 450472	647 bp distal
Rr450473	regulatory region 450473	206 bp distal
Tssr102806	transcription start site region 102806	898 bp downstream
Tssr102807	transcription start site region 102807	860 bp downstream
Tssr102808	transcription start site region 102808	839 bp downstream
Tssr102809	transcription start site region 102809	824 bp downstream
Tssr102810	transcription start site region 102810	589 bp downstream
Tssr102811	transcription start site region 102811	539 bp downstream
Tssr109052	transcription start site region 109052	1956 bp upstream
Tssr109053	transcription start site region 109053	1210 bp upstream
Tssr109054	transcription start site region 109054	1187 bp upstream