rs26891864 SNP Detail

Summary

• ID
  rs26891864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70910232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTTCAGCC TACCCACTCC TGTCCAATCA GCGCTGCGTA
  CTCGGACAGC CACCAATCGC TGGCGCCTTG GGGCCGCTCA CCCACCAATC AAGAGTTGCG
  Y
  CTCTGCGTCG GTCCATCCTT ACTTCTCCGC CTACCAACGC AGAGAGAAGG ACCAGTTCCG
  TCCGCCAATC CCTGCCGGCC ACAGCTAGCT TTCCCTCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37164755	NES08482120	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C		T	C	C	T		C
ss323738902	CHEV_11_70832908	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26891864					SNP	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37164755	NES08482120	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70910232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	within coordinates
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	205 bp upstream
Rr369277	regulatory region 369277	373 bp upstream
Rr402697	regulatory region 402697	within coordinates
Rr450471	regulatory region 450471	within coordinates
Rr450472	regulatory region 450472	216 bp proximal
Rr450473	regulatory region 450473	425 bp proximal
Tssr102806	transcription start site region 102806	164 bp upstream
Tssr102807	transcription start site region 102807	187 bp upstream
Tssr102808	transcription start site region 102808	220 bp upstream
Tssr102809	transcription start site region 102809	235 bp upstream
Tssr102810	transcription start site region 102810	462 bp upstream
Tssr102811	transcription start site region 102811	489 bp upstream
Tssr109052	transcription start site region 109052	885 bp upstream
Tssr109053	transcription start site region 109053	139 bp upstream
Tssr109054	transcription start site region 109054	116 bp upstream