rs26891865 SNP Detail

Summary

• ID
  rs26891865
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70908571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGTTGTAC CAGAACTGAG TTTATGAGCT GGCCCAAGAG
  GACTAACAAC AGTGGTAGGT AGGTGTGTCT GGGTGGAAAA AACACAAAAT AAGGCTGGCT
  R
  TCCTGTGAAA CTCCCTGGGC AGCCAGCTCA TCAGTCTATT CTCAGATCAC ATTATTATTA
  CTGTTGTTGT CGTTGTTGGT TGTTGTTCCT GTTGTTTGTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37164756	NES08482119	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs26891865					SNP	A	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37164756	NES08482119	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70908571 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	1219 bp proximal
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	1866 bp upstream
Rr402697	regulatory region 402697	1460 bp upstream
Rr450471	regulatory region 450471	1487 bp proximal
Rr450472	regulatory region 450472	1877 bp proximal
Tssr102806	transcription start site region 102806	1825 bp upstream
Tssr102807	transcription start site region 102807	1848 bp upstream
Tssr102808	transcription start site region 102808	1881 bp upstream
Tssr102809	transcription start site region 102809	1896 bp upstream
Tssr109052	transcription start site region 109052	753 bp downstream
Tssr109053	transcription start site region 109053	1488 bp downstream
Tssr109054	transcription start site region 109054	1525 bp downstream