rs26892338 SNP Detail

Summary

• ID
  rs26892338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:67145333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA GACGCTATGG TTTCTCAGCT
  Y
  TCCCGAGGCA AACAAGCATT TACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37172560	NES08484449	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T	T	T	T		C	T	T	T		T
ss132326601	ENSMUSSNP2451507	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss323719230	CHEV_11_67068009	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26892338					SNP	T	C	C	T	T	T	T	T	T	T	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37172560	NES08484449	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67145333 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	Coding-Synonymous
Rr449442	regulatory region 449442	521 bp distal
Tssr3528	transcription start site region 3528	226 bp upstream
Tssr3529	transcription start site region 3529	282 bp upstream
Tssr102201	transcription start site region 102201	989 bp downstream
Tssr102202	transcription start site region 102202	500 bp downstream
Tssr102203	transcription start site region 102203	437 bp downstream
Tssr102204	transcription start site region 102204	41 bp downstream
Tssr102205	transcription start site region 102205	166 bp upstream
Tssr102206	transcription start site region 102206	270 bp upstream
Tssr102207	transcription start site region 102207	914 bp upstream
Tssr102208	transcription start site region 102208	1084 bp upstream
Tssr102209	transcription start site region 102209	1119 bp upstream
Tssr102210	transcription start site region 102210	1137 bp upstream
Tssr102211	transcription start site region 102211	1147 bp upstream
Tssr102212	transcription start site region 102212	1169 bp upstream
Tssr102213	transcription start site region 102213	1321 bp upstream
Tssr102214	transcription start site region 102214	1677 bp upstream
Tssr102215	transcription start site region 102215	1691 bp upstream
Tssr102216	transcription start site region 102216	1735 bp upstream
Tssr102217	transcription start site region 102217	1889 bp upstream
Tssr108534	transcription start site region 108534	1903 bp upstream
Tssr108535	transcription start site region 108535	1797 bp upstream
Tssr108536	transcription start site region 108536	453 bp upstream
Tssr108537	transcription start site region 108537	432 bp upstream
Tssr108538	transcription start site region 108538	51 bp downstream
Tssr108539	transcription start site region 108539	259 bp downstream
Tssr108540	transcription start site region 108540	319 bp downstream
Tssr108541	transcription start site region 108541	928 bp downstream
Tssr108542	transcription start site region 108542	1089 bp downstream
Tssr108543	transcription start site region 108543	1204 bp downstream
Tssr108544	transcription start site region 108544	1787 bp downstream