rs26892340 SNP Detail

Summary

• ID
  rs26892340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67143958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGCTGCA GAAGAAGATC AAGGAGTTGC AGGTACATCC
  ATATCTTCTA TCCGTCTAAT TCATCAGTAA ACGAAAAATG ATTGACCCAA GAAGCTGAGT
  Y
  GGTCTTTTCC ACCACCTCCA GGCCCGCATC GAGGAGCTGG AGGAGGAAAT CGAGGCAGAG
  CGGGCCTCCA GGGCTAAAGC AGAGAAGCAG CGCTCTGACC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37172562	NES08484446	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C	T	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26892340					SNP	T	C	T	T	T	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37172562	NES08484446	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67143958 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3528	transcription start site region 3528	1601 bp upstream
Tssr3529	transcription start site region 3529	1657 bp upstream
Tssr102199	transcription start site region 102199	1397 bp downstream
Tssr102200	transcription start site region 102200	1246 bp downstream
Tssr102201	transcription start site region 102201	343 bp upstream
Tssr102202	transcription start site region 102202	865 bp upstream
Tssr102203	transcription start site region 102203	925 bp upstream
Tssr102204	transcription start site region 102204	1323 bp upstream
Tssr102205	transcription start site region 102205	1541 bp upstream
Tssr102206	transcription start site region 102206	1645 bp upstream
Tssr108532	transcription start site region 108532	1374 bp upstream
Tssr108533	transcription start site region 108533	1222 bp upstream
Tssr108534	transcription start site region 108534	528 bp upstream
Tssr108535	transcription start site region 108535	422 bp upstream
Tssr108536	transcription start site region 108536	912 bp downstream
Tssr108537	transcription start site region 108537	924 bp downstream
Tssr108538	transcription start site region 108538	1426 bp downstream
Tssr108539	transcription start site region 108539	1634 bp downstream
Tssr108540	transcription start site region 108540	1694 bp downstream