rs26892342 SNP Detail

Summary

• ID
  rs26892342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67143159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGACCAAGG AGAAGAAGGC CCTCCAGGAG GCCCACCAGC
  AGACCCTGGA TGACCTGCAG GCAGAGGAGG ACAAAGTCAA CACCCTGACC AAAGCCAAAA
  Y
  CAAGCTGGAA CAGCAAGTGG ATGACGTGAG TATGAAAAGC AGTCTTTTTC CTTATAAGGG
  ATGACATACG CCATCATGGA ACGAAGCCAC CAGTGGAGCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37172564	NES08484444	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26892342					SNP	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37172564	NES08484444	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67143159 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3526	transcription start site region 3526	1956 bp downstream
Tssr3527	transcription start site region 3527	1456 bp upstream
Tssr102188	transcription start site region 102188	1995 bp downstream
Tssr102189	transcription start site region 102189	1807 bp downstream
Tssr102190	transcription start site region 102190	1791 bp downstream
Tssr102191	transcription start site region 102191	1770 bp downstream
Tssr102192	transcription start site region 102192	1764 bp downstream
Tssr102193	transcription start site region 102193	1721 bp downstream
Tssr102194	transcription start site region 102194	1579 bp downstream
Tssr102195	transcription start site region 102195	1496 bp downstream
Tssr102196	transcription start site region 102196	1457 bp downstream
Tssr102197	transcription start site region 102197	1413 bp downstream
Tssr102198	transcription start site region 102198	1352 bp downstream
Tssr102199	transcription start site region 102199	598 bp downstream
Tssr102200	transcription start site region 102200	447 bp downstream
Tssr102201	transcription start site region 102201	1142 bp upstream
Tssr102202	transcription start site region 102202	1664 bp upstream
Tssr102203	transcription start site region 102203	1724 bp upstream
Tssr108528	transcription start site region 108528	1689 bp upstream
Tssr108529	transcription start site region 108529	1375 bp upstream
Tssr108530	transcription start site region 108530	1373 bp upstream
Tssr108531	transcription start site region 108531	1345 bp upstream
Tssr108532	transcription start site region 108532	575 bp upstream
Tssr108533	transcription start site region 108533	423 bp upstream
Tssr108534	transcription start site region 108534	263 bp downstream
Tssr108535	transcription start site region 108535	359 bp downstream
Tssr108536	transcription start site region 108536	1711 bp downstream
Tssr108537	transcription start site region 108537	1723 bp downstream