rs26897562 SNP Detail

Summary

• ID
  rs26897562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3584118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACTTATG TTAGGCAAGT
  GTTCTCCTGA CTTGTATCCT CATCCTCTTA TAACTTTTAT TTTGCAACAG GGTCTCTCTG
  TTGCTTGCCC AAGCTGGCCT CAAACTCATT ATCCTTCAGC CTCTGCCTCC TCAGTCACTG
  GGATTATATT TTGGTCCATC ACACTCTGCT TTTGAAACTG AAGCAAGAGT ATCCAGTTAT
  Y
  ATGAAATAGG TGCACACAGA TGAGATGAGG CTCTGGGAGG GAAGCTGTTA GGATAGAATG
  CTATTTGATT GGGGCTCTTT GCCTTAAAAG ACAGAACTGG GAGAGGTCTC TATTTCCAGG
  CAGATATACA AACACAGCTT GAGTCCTTGT TTCCTTTCTG GGTGCCTCAT GTATGAGCAC
  ACAGCAATGC ACTTGGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37111991	NES08502730	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26897562					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37111991	NES08502730	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3584118 () rs orientation: forward

Symbol	Name	Function Class
Gm11951	predicted gene 11951	676 bp upstream
Tssr106495	transcription start site region 106495	612 bp upstream