rs26899971 SNP Detail

Summary

• ID
  rs26899971
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3123782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCCTTGGT CAGCATTTTA TCACAGCAGG GGAAGAAACT
  AGGACCCTTG ACAAAGTCAA TAAAACAGGT AAAGCTCGAG GCAACTGACA CAAACGGTCA
  W
  CTCAGAAGAA AAGAGGAGCC GGGCGTGGTG GTGCACTCCT TTAAGCCCAG CACTCGGGAG
  GCAGAGGCAG GCAGATTTCT AAGTTCGAGG CCAGCCAGGT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37112693	NES08500645	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26899971					SNP	A	A	A	A	A	A	T	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37112693	NES08500645	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3123782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	1201 bp distal
Cpgi2458	CpG island 2458	within coordinates
Rr441481	regulatory region 441481	1332 bp distal
Rr441483	regulatory region 441483	1566 bp distal
Rr441484	regulatory region 441484	832 bp distal
Rr441485	regulatory region 441485	within coordinates
Rr441486	regulatory region 441486	191 bp proximal
Rr441487	regulatory region 441487	1396 bp proximal
Rr441488	regulatory region 441488	1827 bp proximal
Rr441489	regulatory region 441489	1897 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	985 bp upstream
Tssr106449	transcription start site region 106449	453 bp upstream