rs26900468 SNP Detail

Summary

• ID
  rs26900468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:44591141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGATTT ATAATTTTTA
  CAGAAGAAAA TGAGAAAATG TAAATCATGT GGCGGCTCTC TAAAGTGCTT TCTCATGGAG
  TCTTGGGAGG AGGAGGGCCC TTTACCCCCA GTGGATTCTA AATAATAAAC ATTTTAAGAC
  TTTCCTCCAG CCGTGGGAAT TATGGCTGGC TTGGGTGTCT TCTGAACTTT GGGTATGAAA
  Y
  GCTGACCATC TGCAAGCAGT TACTGGACTC TTGGTGATTG GAGAAGACAG AAGTGTTTGG
  AGGAAAGGAA CTATGGGATG GCTGTAAGAT CTGGGGCGGC AGGGAGTCTG GTAGAATAGA
  GATGGGTGGC TCTCAGACTC AGTAGACAGC AATTAGAGAT CCATTTTCAG TTTACGGTTA
  GGAGATGGGA GGAGCTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37125892	NES08330319	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T		C	C	C	C	C	C	T	C	C
ss38819939	mCV24312830	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		C
ss132083715	ENSMUSSNP335413	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26900468					SNP	T	T	T	C	T	C	T	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37125892	NES08330319	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44591141 () rs orientation: forward

Symbol	Name	Function Class
Ebf1	early B cell factor 1	Intron
Rr445671	regulatory region 445671	within coordinates
Tssr101056	transcription start site region 101056	1285 bp downstream