rs26900473 SNP Detail

Summary

• ID
  rs26900473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:44589534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCACTGG AATTAGTTTC
  CCCCATAGTT TCTTGGGTCA GATGTATTTA TTGACCATCT ACTTATTTTT GTGACGTTCA
  CTGTATAGGA TGCTTTGGAG GGGGAAGAGT TGAAGGAGCC ATAGCTCTTC CTTGGTGGAC
  CATGAGACGG GGATGGTGAG GGATACATAA ATCCCAGCTG TCTCTGATTA GGATGAAAAT
  Y
  TAGACAAGGA CAAAGAGTGG GTGAAGGAAT TTGTAGCAGT GCATAGAATA ACGAACTTTG
  GGTTGCCCAT GGAGACATGA CTACCAGGAA AGGAAAATAG GAGCCTCATT CTTTCAATTG
  GGGTGAAGCT TTATAGTGAT TGAGCAGGGT ACAGATGGGG GGCAGCTACT GTAGAGGCCT
  GCTGGTGAAG GCAACACTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37125897	NES08330351	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26900473					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37125897	NES08330351	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44589534 () rs orientation: forward

Symbol	Name	Function Class
Ebf1	early B cell factor 1	Intron
Rr445670	regulatory region 445670	1190 bp distal
Rr445671	regulatory region 445671	1539 bp proximal
Tssr101056	transcription start site region 101056	319 bp upstream