rs26900475 SNP Detail

Summary

• ID
  rs26900475
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:44589215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGTAACA TTGTTAAATG
  TTAAGATATT TTTGTCACCC CAATGCCCTG CTGAACAACA GGAGACTGCT TTAGAGCATA
  ATTAAGCACT GGGCCTATCA GCTTCACTTT ACTAAAGGAA CTGCAAGGAG AAATTGGGGA
  ATAAATTCAA AGTTGCTTTT GAGCTTGAGT AACGAATTTG GGGTGAATTA ATGACACCAA
  M
  ATTGTCAGTG TGCTCTGCTC AGGAAGAGGT CACAGGTCAC CATAGCATGC TGTAATGAGT
  ATGCTTATAT CTTACATGTA ATTATTGCAC TCTAATAGAC AAGAACATTA TAGACACTTG
  GTCACTGGAA TTAGTTTCCC CCATAGTTTC TTGGGTCAGA TGTATTTATT GACCATCTAC
  TTATTTTTGT GACGTTCACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37125899	NES08330348	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26900475					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37125899	NES08330348	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44589215 () rs orientation: forward

Symbol	Name	Function Class
Ebf1	early B cell factor 1	Intron
Rr445670	regulatory region 445670	871 bp distal
Rr445671	regulatory region 445671	1858 bp proximal
Tssr101056	transcription start site region 101056	638 bp upstream