rs26900479 SNP Detail

Summary

• ID
  rs26900479
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:44588487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCATTTACA GTTGAGACTG AGACTAATGG CATTAAATTA
  TTATAGCTAT TGCTAAGGGG GCATTATAAG TGAATCCCTT CCAGCTGGGT TGGCTGTGCA
  K
  GCTTTGTCAA CAGTACAGTT CCTCAAAGGT ATCTTTATTG TTCAGGATCA TTTATAGACC
  AGGTGCTGTG TATACTAGTG GAAGTCTAAG TAACACTGGA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss37125904	NES08330342	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs26900479					SNP	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37125904	NES08330342	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44588487 () rs orientation: forward

Symbol	Name	Function Class
Ebf1	early B cell factor 1	Intron
Rr445670	regulatory region 445670	143 bp distal
Tssr101056	transcription start site region 101056	1366 bp upstream