rs26904634 SNP Detail

Summary

• ID
  rs26904634
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74597883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTGTGAGG CCAGCCTGGG ATATAGAAAC CTTTAAAAAA
  CAAAAGTAAC CTCAAAACAG AAGAGAAAAA AGCTTAGGCA TGAACAATAG AAAACATCCA
  Y
  GTAAGGGGCT GTGGAGATGG CCCAGAGGTT AAGAATGCAT CCTGCTCTTC CAGAAAACTC
  AGTTGTATTT CCCAGCACCC ATGCTAGCCA GCTCTTAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37158868	NES08479253	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T			C	T		T	T	C	T		T
ss38689126	mCV24136886	ABI	CRAMUS_MOUSE	f	SNP		T						C	T
ss132435349	ENSMUSSNP441333	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss323749430	CHEV_11_74520559	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26904634					SNP	T	T	C	T	T	T	T	C	T	C	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158868	NES08479253	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74597883 () rs orientation: forward

Symbol	Name	Function Class
D11Mit352	DNA Segment, Chr 11 Massachusetts Institute of Technology 352	178 bp proximal
Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	within coordinates
Rr386282	regulatory region 386282	within coordinates
Tssr109134	transcription start site region 109134	1427 bp upstream