rs26904635 SNP Detail

Summary

• ID
  rs26904635
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74597870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGCTACAG AGCAAGTGTG AGGCCAGCCT GGGATATAGA
  AACCTTTAAA AAACAAAAGT AACCTCAAAA CAGAAGAGAA AAAAGCTTAG GCATGAACAA
  Y
  AGAAAACATC CACGTAAGGG GCTGTGGAGA TGGCCCAGAG GTTAAGAATG CATCCTGCTC
  TTCCAGAAAA CTCAGTTGTA TTTCCCAGCA CCCATGCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37158869	NES08479252	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C	T	C		C	C	T	C		C
ss38762535	mCV24136885	ABI	CRAMUS_MOUSE	f	SNP		C						T		C
ss132435345	ENSMUSSNP5416560	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
ss323749429	CHEV_11_74520546	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26904635					SNP	C	C	T	C	C	C	C	T	C	C	T	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158869	NES08479252	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74597870 () rs orientation: forward

Symbol	Name	Function Class
D11Mit352	DNA Segment, Chr 11 Massachusetts Institute of Technology 352	191 bp proximal
Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	within coordinates
Rr386282	regulatory region 386282	within coordinates
Tssr109134	transcription start site region 109134	1414 bp upstream