rs26904636 SNP Detail

Summary

• ID
  rs26904636
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74597666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCAAAACT AAAACTTCAA CTTTTTATTA CCTTTAGCAT
  GTACATTGCT GTTCTGGGTT CTTCTAACAT TTTCACGAGA CACTAAGACA AACTCAACTA
  R
  AATGGTCTAT AATTATGATC TTTAAAAAAA AATTAAACCC AAATAGATTA TTGTTGGTGA
  ATGTGTTAGC CCAGCATCCA AGAGGTAGAA AGCAGAGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37158870	NES08479265	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A			G		A	A	G		A
ss38835719	mCV24136615	ABI	CRAMUS_MOUSE	f	SNP							G	A
ss132435333	ENSMUSSNP6897806	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss323749424	CHEV_11_74520342	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs26904636					SNP	A	A	G	A	A	A	G	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158870	NES08479265	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74597666 () rs orientation: forward

Symbol	Name	Function Class
D11Mit352	DNA Segment, Chr 11 Massachusetts Institute of Technology 352	395 bp proximal
Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	within coordinates
Rr386282	regulatory region 386282	within coordinates
Tssr109134	transcription start site region 109134	1210 bp upstream