rs26904637 SNP Detail

Summary

• ID
  rs26904637
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:74597491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCAGGCCT CAAATTCAAG GATCCCCTTG CCTTTGCGCC
  CCTTCCCCCA TGTTTTGATT CTAGGCTTGC GGCACCACAC CCAACAAACC TTTTTTCTTT
  Y
  AAAACACTGG CATGTATCAG AACAATACAG TGATTGTAAA AATCCTACAG AAAAAAAAAA
  AAATCGACAA GCTGCCTCAA AACTAAAACT TCAACTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J
ss37158871	NES08479263	PERLEGEN	MM_PANEL2	f	SNP		C		C		T
ss132435325	ENSMUSSNP684456	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss323749422	CHEV_11_74520167	CHEVERUD	SCREENING_POP	f	SNP					T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J
rs26904637					SNP	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158871	NES08479263	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74597491 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1			Intron
				Noncoding-Transcript-Variant
Rr386282	regulatory region 386282			within coordinates
Tssr109134	transcription start site region 109134			1035 bp upstream