rs26904638 SNP Detail

Summary

• ID
  rs26904638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74597018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCTGCG TTTGCCTAGT
  ACCTTCCTTG CATACACACA TTTAAGACCT CTCACTGCAC TGGAATTGTA TGCTATGATA
  GCTCAACAAT CATTCTATCT CTAAAATAAA TTCACAGTAA TTAGCACACA AATAGGCAAT
  CTTTTGTTCC CTAATTACCC TACGAATCAG TAAAACTAAG ACCAATTTGT AATGTGGTCT
  Y
  AGAAAGCAAA TACACTACAT CACTTCAGTC TCTTTTCTCT CTTAAAAAGC CAAACAAATA
  AATTCTAAAA TCTAGTCAGT TAGATTCATC AAAGTTCAGT ACTTGGGGTT GAGTTGGATG
  TAAATTTGGG TTTTTTTTTT AAAGATTTAT TTATTGATTA TAAATATTAT ATATTATTCA
  GACACTCCAG AAGTCAGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37158872	NES08479286	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26904638					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158872	NES08479286	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74597018 () rs orientation: forward

Symbol	Name	Function Class
D11Mit352	DNA Segment, Chr 11 Massachusetts Institute of Technology 352	1043 bp proximal
Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	within coordinates
Rr386282	regulatory region 386282	within coordinates
Tssr109134	transcription start site region 109134	562 bp upstream