rs26904639 SNP Detail

Summary

• ID
  rs26904639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:74596885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTACA AGTTCAATTT
  AATACTAATG AATATTTAAT TAATATTACC AAAACTTTCA GCAGCTACCA TAAAAGCAGA
  CCCTGAGTTT TATTCACTTT TACATGTTTT TATATGAAAC AGTTAAGCAA AGTAGCTCCT
  GCGTTTGCCT AGTACCTTCC TTGCATACAC ACATTTAAGA CCTCTCACTG CACTGGAATT
  R
  TATGCTATGA TAGCTCAACA ATCATTCTAT CTCTAAAATA AATTCACAGT AATTAGCACA
  CAAATAGGCA ATCTTTTGTT CCCTAATTAC CCTACGAATC AGTAAAACTA AGACCAATTT
  GTAATGTGGT CTTAGAAAGC AAATACACTA CATCACTTCA GTCTCTTTTC TCTCTTAAAA
  AGCCAAACAA ATAAATTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37158873	NES08479285	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26904639					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158873	NES08479285	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74596885 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D11Mit352	DNA Segment, Chr 11 Massachusetts Institute of Technology 352			1176 bp proximal
Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1			Intron
				Noncoding-Transcript-Variant
Rr386282	regulatory region 386282			within coordinates
Tssr109134	transcription start site region 109134			429 bp upstream