rs26904640 SNP Detail

Summary

• ID
  rs26904640
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74596635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTAACAGAAA GCAGTATAAA GGCTAGCTAG TATTAAAAGA TCAAAAGCAA AATTACAAAA
  GAAAAAAATT GAATACTAAC ATTGTCAGCA AATCTTATGG GTGCTACTGG AGTACGGCTC
  ACTGTTTGAT CCTCAGCAGC ATAAATTAAT ACACACCCAG TTTCTAGTTT TTTGTTTTGA
  CCCATACAAT GAAAAAGAAC AGACTCAGCA AGTTGTTTTC TGACCTCCAT GTATGTGATG
  TGGTATGTGT GCATGCACAC CCCTCCCCCA TACACACAAA ATAAAACAAA TGTGATAGTG
  K
  TTTTTTTTTA AGATTATTAT TAAGGTCATG TCCTGTAAAA CTTCAAATTT TTATTTACAA
  GTTCAATTTA ATACTAATGA ATATTTAATT AATATTACCA AAACTTTCAG CAGCTACCAT
  AAAAGCAGAC CCTGAGTTTT ATTCACTTTT ACATGTTTTT ATATGAAACA GTTAAGCAAA
  GTAGCTCCTG CGTTTGCCTA GTACCTTCCT TGCATACACA CATTTAAGAC CTCTCACTGC
  ACTGGAATTG TATGCTATGA TAGCTCAACA ATCATTCTAT CTCTAAAATA AATTCACAGT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37158874	NES08479282	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G	T
ss38732072	mCV23961994	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs26904640					SNP	G	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158874	NES08479282	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74596635 () rs orientation: forward

Symbol	Name	Function Class
D11Mit352	DNA Segment, Chr 11 Massachusetts Institute of Technology 352	1426 bp proximal
Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	within coordinates
Rr386282	regulatory region 386282	179 bp upstream
Tssr109134	transcription start site region 109134	179 bp upstream