rs26904643 SNP Detail

Summary

• ID
  rs26904643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74595058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGTCACAT TTTTTTTTAA TTTACTTTAG TGTTAGTCTA
  CACTTACATA ACTGCAAACG CATAGCTAGG CATTGCAAAG TTCATGTACA GGCACGCTTG
  R
  CACACTGCTT TAAACACTCT GGAATATGAA GACATGCTAT TTCCTAATAA AGTTTCCCAG
  TAAGTATACT CTATTCTACT AAATCCACAA CTTTTCAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37158877	NES08479357	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A		A	G	A		A	A	G	A		A
ss38665709	mCV23961970	ABI	CRAMUS_MOUSE	f	SNP	A	A	G				G	A
ss132435301	ENSMUSSNP341968	ENSEMBL	ENSEMBL_Sanger	f	SNP			G					A
ss323749411	CHEV_11_74517734	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26904643					SNP	A	A	G	A	A	A	G	A	G	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158877	NES08479357	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74595058 () rs orientation: forward

Symbol	Name	Function Class
Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	within coordinates
Rr386282	regulatory region 386282	1756 bp upstream
Tssr109134	transcription start site region 109134	1385 bp downstream