rs26904906 SNP Detail

Summary

• ID
  rs26904906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70215120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGCTTT TTAAATGCAT
  CTTGCTTATA TAGTCAGAGA ATATTCTATT TGATTCTAAT TTTAAAAATA TAGCTATGCT
  ACCATCCCAG TGCTAATATT TGTTTATGGG TTGCACAATT TTACAATAAT CATAGTTCAC
  GTATCCCCCC ATTGATACAT GTTCTCATTA TACTCCATTT AGCCCAGGCT GCCCGGAATT
  R
  CAGTTTTTCC ATGACAGGCT CCAGAGTCCT GTGTTCTTTC TCATGGGGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTAGACCAG AGAAGAACTT TTGGGAGTAT CTTTCTCTAT
  TGATCCCTAC CTTATTTCCT TGAGACAAAG CCTCTCACTG GCCCAGGAGT TCACCATTCT
  GTCTAGGCTG ACTGGCCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37165840	NES08487878	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs26904906					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165840	NES08487878	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70215120 () rs orientation: forward

Symbol	Name	Function Class
Alox12e	arachidonate lipoxygenase, epidermal	1666 bp upstream
Cpgi3180	CpG island 3180	1871 bp distal
Tssr108941	transcription start site region 108941	1818 bp upstream
Tssr108942	transcription start site region 108942	1780 bp upstream
Tssr108943	transcription start site region 108943	1757 bp upstream