rs26904908 SNP Detail

Summary

• ID
  rs26904908
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70211585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC CTTCTCCAGC TGGGTCTGTA
  M
  GTCTTCCATC CCTGGAGGCA GGACC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37165842	NES08487902	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C			A	C		C	A		C
ss38860642	mCV23935509	ABI	CRAMUS_MOUSE	f	SNP		C	C					C	A
ss132369436	ENSMUSSNP1628284	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						A
ss323735017	CHEV_11_70134261	CHEVERUD	SCREENING_POP	f	SNP												C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs26904908					SNP	C	C	C	C	C	C	C	C	A	A	C	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165842	NES08487902	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70211585 () rs orientation: forward

Symbol	Name	Function Class
Alox12e	arachidonate lipoxygenase, epidermal	within coordinates
Cpgi3180	CpG island 3180	898 bp proximal
Rr450275	regulatory region 450275	1072 bp proximal
Tssr108941	transcription start site region 108941	1705 bp downstream
Tssr108942	transcription start site region 108942	1743 bp downstream
Tssr108943	transcription start site region 108943	1761 bp downstream