rs26905449 SNP Detail

Summary

• ID
  rs26905449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTCTAT CCGCCCTCTC
  AGCGCCCTGC CTGCGGTTCC TCCCCATCAG CTCCTATAGG TCTCAAGCGC AGACGCCTGC
  TCACGGGCTA CTGGCCCGGC TCCGCCTCAT CTGCCAGGCT CACATCCCTC CCGCCCCGCC
  AAGGGCAGCA GCTGCTCCCG GCTCCAGAGG CATTCGCGGG ACAGTGGTTC CCGCTGACTG
  Y
  TCCATCACTG ACTGCTCCAT CACTCTTCGC TGTCTGGCTT CCCTTGTCTA CCTCGTTTCT
  AACTGTGTGG CTTTAGCCAT AGTGTCCGGG ATTGAGCCCT CTCTTGGCTC CTGAAGAGCG
  GCCATGGCCA CCTATAAAGT CAAGGTGGCC ACGGGCACTG ACTTCTTTTC GGGGACGCTG
  GATTCAATTT CACTGACCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37167775	NES08490013	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	C		C	C	C	C	C	C
ss132350016	ENSMUSSNP3437376	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs26905449					SNP	T	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167775	NES08490013	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047949 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	within coordinates
Cpgi3111	CpG island 3111	within coordinates
Rr449891	regulatory region 449891	124 bp distal
Rr449892	regulatory region 449892	within coordinates
Rr449893	regulatory region 449893	986 bp proximal
Tssr102419	transcription start site region 102419	222 bp downstream
Tssr102420	transcription start site region 102420	207 bp downstream
Tssr102421	transcription start site region 102421	72 bp downstream
Tssr102422	transcription start site region 102422	62 bp downstream
Tssr102423	transcription start site region 102423	42 bp downstream
Tssr102424	transcription start site region 102424	13 bp downstream