rs26905511 SNP Detail

Summary

• ID
  rs26905511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69001959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAAGTAGT TTATTTTATT TTCCAGTTCT TTCTTTAAAG
  AAGCTCCCAC TGGGATTCTG TCACCCGGGA CCGTTTCGGT AGCGCCTCGG TACGACTTAC
  Y
  GTGAACTTGT AAAAGACGCT TCGATTTCAA TTCCTAACTC CGTTCACGAA GATTACGGGC
  TCCACTCGGA ATCGCTCATC CCTTTTCGCT ACTTTCCGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37167842	NES08490989	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T		T	T	C		T
ss132349073	ENSMUSSNP4280682	ENSEMBL	ENSEMBL_Sanger	f	SNP							C
ss323727521	CHEV_11_68924635	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26905511					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167842	NES08490989	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69001959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	within coordinates
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	133 bp downstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	595 bp downstream
Per1	period circadian clock 1	1173 bp downstream
Rr402659	regulatory region 402659	260 bp downstream
Rr449875	regulatory region 449875	within coordinates
Rr449876	regulatory region 449876	540 bp distal
Rr449877	regulatory region 449877	849 bp proximal