rs26905514 SNP Detail

Summary

• ID
  rs26905514
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69001363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGGTTG AATAATAGGA
  AATCCAGTTC GCACTGTTGG TCAAAATAAA AAACCTCCTT TCTAGGCACC TATTTGCTAC
  CTGCCTCTAA TAGCTGATCT ACTTCGAAGT GAAAAGTGCA TTCTCGTTGG CGCCGTGGCT
  TAGCTGGTTA AAGCGCCTGT CTAGTAAACA GGAGATCCTG GGTTCGAATC CCAGCGGTGC
  Y
  TGGTTTATGT GGGAAGTGAT ATATTATTGC TGGATTATTG ACATCTAGCT GCCGCCTTGC
  CTAAATATAC TCTTAATGCC AGTTTTCCTA TGCACTTTTA AGAGTATACA GAGGCAAACC
  TCTGATTCTT AAGACCCTGC TGCTCAAACC TAGGAAAGAC TGTCATACGG AATGTACTAG
  TTTTATATTA GGGTTTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37167846	NES08491028	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26905514					SNP	C	C	C	T	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167846	NES08491028	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69001363 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	322 bp proximal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	382 bp upstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	within coordinates
Per1	period circadian clock 1	577 bp downstream
Rr402659	regulatory region 402659	35 bp upstream
Rr449875	regulatory region 449875	within coordinates
Rr449876	regulatory region 449876	35 bp proximal
Rr449877	regulatory region 449877	1445 bp proximal