rs26905516 SNP Detail

Summary

• ID
  rs26905516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69001112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCCAGTTC TCCGTACGGT GGCAGAAACA AGTAGAAGTG
  CTTGGAACTC CGTGGGCTGA CTTCTAAAAT TTATGTTAGC ACACCAGAAA TAGCTGGTCA
  Y
  TTTAGTTAAG ATACCAGTCC TTGAACTTAA AACTTAGAAG AGGGGAGCTT GGGAGGGTTG
  AATAATAGGA AATCCAGTTC GCACTGTTGG TCAAAATAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37167851	NES08491051	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C		C	C		C	C	C	T		C
ss132349035	ENSMUSSNP238115	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss323727512	CHEV_11_68923788	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26905516					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167851	NES08491051	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69001112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	573 bp proximal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	633 bp upstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	179 bp upstream
Per1	period circadian clock 1	326 bp downstream
Rr402659	regulatory region 402659	286 bp upstream
Rr449875	regulatory region 449875	within coordinates
Rr449876	regulatory region 449876	286 bp proximal
Rr449877	regulatory region 449877	1696 bp proximal