rs26907739 SNP Detail

Summary

• ID
  rs26907739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71639382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCCAACTG CCAGTGGATC TTAGCTATGT GGCAAGGAGA
  TCTAGGCACA GGGAGGGGCT TGGCATGGTT TGAAAGGGGT GTTGCTATCA GGGCTACCCA
  R
  GCTGGCTTCT TGAACCTTTA TCTGCAACCA GTGCTAAAGA GGAAGGCTTT ATTCCAACAC
  AGAAATACTC ATGCCCATTT TGACACCCAA ACTGCCTTTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37162966	NES08482409	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26907739					SNP	A	A	G	A	A	A	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37162966	NES08482409	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71639382 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3209	CpG island 3209	1862 bp proximal
Rr236016	regulatory region 236016	1019 bp proximal
Rr241547	regulatory region 241547	within coordinates
Rr247127	regulatory region 247127	1218 bp proximal
Tssr102813	transcription start site region 102813	1358 bp upstream
Wscd1	WSC domain containing 1	1364 bp upstream