rs26907740 SNP Detail

Summary

• ID
  rs26907740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71639219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGAGACTA TTTTAATTCT TAGTCTTAGC CTTGCAGGGG
  AAGCAGGGGT GACCGCATTA CTCAGGCAGG AGTAGCTGGA TCTGTGTCAA CACTGTTGTG
  R
  GACCACCATA GAAGTCCATG GGGCATTAGG ATGCCTTTAA CATATGGGAG GAAAATGATA
  TGGAGCCAAC TGCCAGTGGA TCTTAGCTAT GTGGCAAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37162967	NES08482408	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A	A	G	G		A	G	G	G		G
ss38824708	mCV23438296	ABI	CRAMUS_MOUSE	f	SNP							G		A
ss132393476	ENSMUSSNP159108	ENSEMBL	ENSEMBL_Sanger	f	SNP									A
ss323743703	CHEV_11_71561895	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26907740					SNP	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37162967	NES08482408	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71639219 () rs orientation: forward

Symbol	Name	Function Class
Rr236016	regulatory region 236016	1182 bp proximal
Rr241547	regulatory region 241547	within coordinates
Rr247127	regulatory region 247127	1381 bp proximal
Tssr102813	transcription start site region 102813	1521 bp upstream
Wscd1	WSC domain containing 1	1527 bp upstream