rs26908291 SNP Detail

Summary

• ID
  rs26908291
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69575008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGGAGGGG GTTTTCTAAG TTTAGTATGA GCAGAGGGAT
  CAGGAAAACC CTCCTTACAG ACAGGGTACA TAGAAAGAAG AGTGACAAGC CAGTCTCCAT
  R
  TCCACACGGC AGGCTCAGGG CTTATCTGGG ATTACCTGAC TATAGAGCAG ATAAATTCCA
  GTGTCCCAGA CTCGTACAAT GTCTCCCTGG GCCTCCAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37166928	NES08482698	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G		A	G	A		G
ss323731056	CHEV_11_69497684	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs26908291					SNP	G	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166928	NES08482698	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69575008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	1889 bp distal
Rr450069	regulatory region 450069	1608 bp distal
Rr450070	regulatory region 450070	1219 bp distal
Rr450071	regulatory region 450071	within coordinates
Rr450072	regulatory region 450072	1067 bp proximal
Rr450073	regulatory region 450073	1362 bp proximal
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	141 bp upstream
Tssr102520	transcription start site region 102520	173 bp upstream
Tssr102521	transcription start site region 102521	214 bp upstream
Tssr102522	transcription start site region 102522	307 bp upstream
Tssr102523	transcription start site region 102523	369 bp upstream
Tssr102524	transcription start site region 102524	1755 bp upstream
Tssr108781	transcription start site region 108781	1093 bp downstream
Tssr108782	transcription start site region 108782	1155 bp downstream
Tssr108783	transcription start site region 108783	1338 bp downstream
Tssr108784	transcription start site region 108784	1355 bp downstream